MmuEX0014947 @ mm10
Exon Skipping
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31264523-31265459:-
Coord C1 exon
chr14:31265263-31265459
Coord A exon
chr14:31264911-31265055
Coord C2 exon
chr14:31264523-31264681
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATAGGTGGGCTTTATTGCAGGGA
3' ss Score
3.99
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTGAGTGGCGCTATCTCTTGTCTGGAGGCTCCATCCAGACCATGTTTGAGAACCCTGCACCACAGTGGCTATCAGACCGGGCCTGGCGAGACATCTTGGCACTTTCAAACCTGCCAACTTTTGCCACCTTCTCTAATGACTTCGTGATGTACCTCTCAGAATTCCAGGCCATCTTTGACAGTGCTGAGCCTCACAG
Seq A exon
GGAGCTCTTGCCTGGCATCTGGAACGCATACCTGGACGAGTTCCAGAAACTGCTTATTCTCCGTTGCCTGCGTGGGGATAAAGTCACTAATGCCATGCAGGACTTTGTGGCCACCCACCTGGAACCCCGCTTCATTGAGCCCCAG
Seq C2 exon
ACAGCCAATCTGTCTGCAGTGTTCAAAGAGTCCAACTCCACAACGCCCCTCATCTTCGTGCTGTCACCTGGTACTGACCCTGCTGCTGACCTCTATAAATTTGCAGAAGAAATGAAGTTTTCCAAGAAGTTCTCTGCCATCTCCTTGGGACAGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(20.8=81.8)
A:
PF0302810=Dynein_heavy=FE(18.5=100)
C2:
PF0302810=Dynein_heavy=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGCTATCTCTTGTCTGGA
R:
GTGACAGCACGAAGATGAGGG
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types