GgaEX6009923 @ galGal4
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3096870-3098099:+
Coord C1 exon
chr12:3096870-3097066
Coord A exon
chr12:3097403-3097547
Coord C2 exon
chr12:3097941-3098099
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCAAAATAACTGCTTTGCAGAGA
3' ss Score
3.67
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GATGAGTGGCGATACCTGCTCTCAGGGGGAGCTGTAAAGGAGGTGCAGGAGAACCCAGCTCCAGACTGGCTCAATGAGCGAGCATGGGGAGACATCCTGGCTTTGAGCAACCTGAAGAACTTCTCTGGCTTTGCCAATGACTTTGTCGCCAACCTTGCAGCATTCAGGGCCATCTTTGACAGCCACAAACCTCACAG
Seq A exon
AGAGACCCTGCCTGGGAAGTGGGATGTTGAGCTTGATGCCTTCCAGAAGCTGCTGGTTCTGCGGTGTCTGCGGGGAGATAAGATCACCAATGCCATGCAGGACTTCGTGGCACTGAACCTGGATCGGCACTTCATTGAGCCTCAG
Seq C2 exon
ACTGCTGACCTCTCCATCGTGTTCAGGGAATCCAGTGCCACCACCCCCCTCGTGTTCGTGCTGTCCCCAGGCACTGACCCAGCTGCCGACCTTTACAAGTTTGCTGAAGAGATGAAGTTCTCCAAAAAGCTCTCTGCCATTTCCCTGGGCCAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'71-71,'71-69,72-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(33.1=81.8)
A:
PF0302810=Dynein_heavy=FE(29.4=100)
C2:
PF0302810=Dynein_heavy=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCAGACTGGCTCAATG
R:
ACTTGTAAAGGTCGGCAGCTG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]