RnoEX6054806 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7350160-7351106:-
Coord C1 exon
chr16:7350910-7351106
Coord A exon
chr16:7350542-7350686
Coord C2 exon
chr16:7350160-7350318
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATAGGTGGGCTTTATTGCAGGGA
3' ss Score
3.99
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGTGAGTGGCGCTACCTTTTGTCTGGAGGCTCCATCCAGACCATGTCTGAGAACCCTGCCCCACATTGGCTCTCAGACCGGGCCTGGAGAGACATCTTGGCACTCTCAAACCTGCCAGCCTTTTCTACCTTCTCTACCGACTTCGTGCAGCACCTCCCGAAATTCCAGGCCATCTTTGACAGTGCTGAGCCTCACAG
Seq A exon
GGAGCCCTTGCCTGGCATCTGGAACACATACCTGGACGAGTTCCAGAAACTGCTTATTCTCCGTTGCCTGCGTGGGGATAAAGTTACTAATGCCATGCAGGACTTTGTGGCCAACCACCTGGAACCCCGATTCATTGAGCCCCAG
Seq C2 exon
ACAGCCAATCTGTCTGCAGTGTTCAAGGAGTCCAACTCCACAACACCCCTCATCTTTGTGCTGTCACCTGGTACTGACCCTGCTGCTGACCTCTATAAATTTGCAGAAGAAATGAAGTTTTCCAAGAAGCTCTCTGCCATCTCTTTGGGACAGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'86-87,'86-86,87-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(7.6=81.8)
A:
PF0302810=Dynein_heavy=FE(6.8=100)
C2:
PF0302810=Dynein_heavy=FE(7.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGGCGCTACCTTTTGTC
R:
GGGTGTTGTGGAGTTGGACTC
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]