DreEX6095533 @ danRer10
Exon Skipping
Gene
ENSDARG00000026329 | arhgap29a
Description
Rho GTPase activating protein 29a [Source:ZFIN;Acc:ZDB-GENE-030131-9510]
Coordinates
chr24:28447652-28450895:+
Coord C1 exon
chr24:28447652-28447712
Coord A exon
chr24:28449035-28449181
Coord C2 exon
chr24:28450831-28450895
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGTCCTCTTCACAGGCC
3' ss Score
11.63
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCCTTTGAAAACCTGACGCTGGAGTCTGGCGGATGTGGACCGGAAAAAGATGACCCTCCAG
Seq A exon
GCCCGTCTCCACCAGCGCGGGTGGAGCAGATGGATGGAGCTCTGCTCAGGAGTGACAGCGGGGTGGAGTCGGCTCTGCTTTATGCCAAAGCCTGGTCCAAATACACCAAGGAGCTGCTGGCCTGGGTGGACAAACGCCTGAACATGG
Seq C2 exon
ACATCGAGTGTGCAAAGAGCTATGCCAAGATGGCTGAATCTGCAAAGGCGCTGGCGTCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026329-'10-13,'10-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.241 C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAAACCTGACGCTGGAGT
R:
CTGTTGAGACGCCAGCGC
Band lengths:
122-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]