RnoEX0011067 @ rn6
Exon Skipping
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225588022-225589756:+
Coord C1 exon
chr2:225588022-225588070
Coord A exon
chr2:225588770-225588907
Coord C2 exon
chr2:225589692-225589756
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTGATGCTTTTATTTTCAGGAA
3' ss Score
9.63
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCCTTTGAAAACATTTCTATGGACTCAGTGGACTTACCTCATGAAAAAG
Seq A exon
GAAACTTTTCTCCTATAGAACTAGACAACTTGCTGTTAAAGAACTCTGACTCTATAGAACTGGCTTTGTCTTATGCTAAAACTTGGTCAAAATATACCAAGAACATAGTGTCCTGGGTTGAAAAAAAGCTCAACTTGG
Seq C2 exon
AATTGGAGTCCACTAGAAATATTGTAAAATTGGCAGAGGCAACTAGATCTAGCATTGGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563-'18-20,'18-17,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGAAAACATTTCTATGGACTC
R:
CTGTATTCCAATGCTAGATCTAGTTG
Band lengths:
114-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]