GgaEX7006837 @ galGal4
Exon Skipping
Gene
ENSGALG00000005683 | ARHGAP29
Description
rho GTPase-activating protein 29 [Source:RefSeq peptide;Acc:NP_001231811]
Coordinates
chr8:12581664-12582682:+
Coord C1 exon
chr8:12581664-12581724
Coord A exon
chr8:12582184-12582321
Coord C2 exon
chr8:12582618-12582682
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTCGATGCTTTATTTTCAGGAC
3' ss Score
8.33
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCTTTTGAGAATCTCTCTGTGGAGTCTGGGGGTTCACTGCATGAAAGGGATGATATTCAAG
Seq A exon
GACATCTTCGAGCAGAGGAGGTTGACAACATGCTCCTAAGGAATGACAGTGGAATTGAATCGGCTCTGTCATATGCTAAAGCGTGGTCAAAATATACCAAGGATGTAGTCGCATGGGTAGAAAAAAAGCTTAGTTTGG
Seq C2 exon
AAGTGGAATGTGCTAAAAACTTAGCAAAAATGGCTGAAACCATTAAAGCTGCTGTTGGACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-'14-16,'14-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGAGAATCTCTCTGTGGAGTCTG
R:
GCGGTCCAACAGCAGCTTTAA
Band lengths:
122-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]