HsaEX6032230 @ hg19
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:30207]
Coordinates
chr1:94669486-94671239:-
Coord C1 exon
chr1:94671191-94671239
Coord A exon
chr1:94670617-94670754
Coord C2 exon
chr1:94669486-94669550
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTGATATTTTTGTTTTCAGGAA
3' ss Score
9.41
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCGTTTGAAAATGTTTCTGTGGAATCAGTGGACTCATCCAGTGAAAAAG
Seq A exon
GAAATTTTTCCCCTTTAGAACTAGACAACGTGCTGTTAAAGAACACTGACTCTATCGAGCTGGCTTTGTCATATGCTAAAACTTGGTCAAAATATACTAAGAACATAGTTTCATGGGTTGAAAAAAAGCTTAACTTGG
Seq C2 exon
AATTGGAGTCCACTAGAAATATGGTCAAGTTGGCAGAGGCAACTAGAACTAACATTGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083036=tRNA_lig_kinase=PU(6.2=31.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTTGAAAATGTTTCTGTGGA
R:
CAATGTTAGTTCTAGTTGCCTCTGC
Band lengths:
106-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)