HsaEX6032230 @ hg38
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:HGNC:30207]
Coordinates
chr1:94203930-94205683:-
Coord C1 exon
chr1:94205635-94205683
Coord A exon
chr1:94205061-94205198
Coord C2 exon
chr1:94203930-94203994
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTGATATTTTTGTTTTCAGGAA
3' ss Score
9.41
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCGTTTGAAAATGTTTCTGTGGAATCAGTGGACTCATCCAGTGAAAAAG
Seq A exon
GAAATTTTTCCCCTTTAGAACTAGACAACGTGCTGTTAAAGAACACTGACTCTATCGAGCTGGCTTTGTCATATGCTAAAACTTGGTCAAAATATACTAAGAACATAGTTTCATGGGTTGAAAAAAAGCTTAACTTGG
Seq C2 exon
AATTGGAGTCCACTAGAAATATGGTCAAGTTGGCAGAGGCAACTAGAACTAACATTGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962-'23-19,'23-17,25-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTTGAAAATGTTTCTGTGGA
R:
CAATGTTAGTTCTAGTTGCCTCTGC
Band lengths:
106-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains