DreEX6096648 @ danRer10
Exon Skipping
Gene
ENSDARG00000102312 | CABZ01063402.1
Description
NA
Coordinates
chr24:40676853-40702344:+
Coord C1 exon
chr24:40676853-40677119
Coord A exon
chr24:40693470-40693588
Coord C2 exon
chr24:40702255-40702344
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCTCTCTCAACAGACT
3' ss Score
12.56
5' ss Seq
CTCATATCC
5' ss Score
-13.36
Exon sequences
Seq C1 exon
ATGGCAGCCATACTGTTTCCACCGGGTCCTGACAGTCTGCACCGGTTCACGCGTGAGTCCCTGGCTGGAATCGAGCAGCGGATCGCGGAGGAGGAGGCCCGCAATGCCAAACGCTACCAGGAGGACCGGGGCGACGTGGAGCCCCCTAAACCCCGCGCAGACCTGGAGGCCGGAAAACAACTGCCGCGCATCTTCGGAGACATTCCCTCAGCACTGGTGGGCGTCCCACTGGAGGACATCGACCCTTTCTACTTCCAGAACCGCAGA
Seq A exon
ACTTTTATAGTACTGAACAAAGGGAAGGCCATCTTCCGGTTTAGTGCCACGTCTGCACTCTATATTTTTAGCCCTTTTCATCCCATTAGAAGAGCATCAATACGGATTTTAGTACACTC
Seq C2 exon
TTTATTCAGTCTTTTCATTATGTGCACTATTCTGACCAACTGTTGCTTCATGGCCATGTCTGAACCGGCGCAGTGGGCCAAATACGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102312-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAATCGAGCAGCGGATC
R:
GCCATGAAGCAACAGTTGGTC
Band lengths:
257-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]