DreEX6096669 @ danRer10
Exon Skipping
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41158411-41160017:-
Coord C1 exon
chr24:41159991-41160017
Coord A exon
chr24:41159779-41159908
Coord C2 exon
chr24:41158411-41158521
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTCATGTTTGTTCTTCACAGCCG
3' ss Score
8.27
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGTCAGAGGAGGATAAAACTTGTTTG
Seq A exon
CCGTTGATTATATATTATATGAGGGAGAGATACTACAGACATGCCATCAATACAGCTGCGAGGAGTTTAAAAGTGTACAATAATGATCCTGTGCTCCGTTTCTTCAAAGCTTTTGCAACTCTGATGGAAG
Seq C2 exon
GTCACTCACAGGAGGCTCTACAAGAGCTCATCCTGCTGAAGGATCATCCTCATCTGTCTCTGTGTTCAACAGTAGCTCTCATTTACGCACACAAACACTGTGAGACTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCAGAGGAGGATAAAACTTGT
R:
CGACAGTCTCACAGTGTTTGT
Band lengths:
138-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]