GgaEX0016402 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19154460-19156285:+
Coord C1 exon
chr7:19154460-19155246
Coord A exon
chr7:19155375-19155504
Coord C2 exon
chr7:19156175-19156285
Length
130 bp
Sequences
Splice sites
3' ss Seq
CGGGTTCGTCTCTCTCGCAGGCC
3' ss Score
10.18
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACGCATGATAAAATTTTCGAAGGCAGCCATTTGGAATCCCGAGATCACCAGTACGGGCGCCTCCAGGGGGCAGGCAGGAGGCGGCTGCGCCTACAGGGCCGGGGCTGGGTGGCTGAGGCAGCCACCAGGACGGCATTACGCGCACCGAGACCCCGCGGGCCCTGACGCGCCTCGGGAAGAGCCAGGCACGGCACAGCCCAGCGGCCATTACGGCCCCCCAGCAGGGATTGTTCAAACCCCGCCTCGCAGCCAATGGTAACAGCCTCTCGTGAAGGCGTTCCCGCCCCCTCTCCTATGAACATCCGGCCTGTTCCGACGCTTACAGTTTTTCTTCCTGTGTCTCTCCCGCCTCCTTTCTCTGGGAGCCAATGGCAGCGTGCCGCTGGGCTCTTCCCCTCCCCTTCCGGAGGCCTACGCTGGTGGCGTTGGCTAGCAACGGCGGAGGCGATGGACGCTGCAGTGCAGCAG
Seq A exon
GCCCTGCTCAACTACTACTGCCAGGAATGCTACTTCCACCACGTCCGGGCTGCGGCGGAGGAGGCGCTGGGCCGGCTGGGCAGCGACCCGGTGTTCCAATTCTACCGGGCGTACGGCGCGCTGCGCACAG
Seq C2 exon
GTGATGTCCAAGAGAGTATTCGACAACTGGAATCCATTAAGAACAAACAGGAGGTGTCACTTTGTGCAATGATGGCGCTGATCTACGCCCACAAAAAGAGCCCTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATGAACATCCGGCCTGT
R:
GCACAAAGTGACACCTCCTGT
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]