DreEX6038617 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50159929-50163365:-
Coord C1 exon
chr9:50163186-50163365
Coord A exon
chr9:50160132-50160261
Coord C2 exon
chr9:50159929-50160039
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTTGAATTGTTTCAGGCA
3' ss Score
7.65
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGTTTCCAAGCGGAAGCAGCGGAGTTTATTTGGTTACTATGATGCTTCTTCTTATCAAAGATGGCGAAAAAGGGAGATAAATAATTTCAGAAAACCTCGTTTTGTGTCGTGTGTGTTTTCAGGTTTTCCAGGAGTGTGTATAGTATGGCGAGTGTTGAGGACGACGAGAACTGCGCGCTT
Seq A exon
GCACTGATCTTATACTACTGCCAGGAAAAGTACTCCAGTCATGTCGTAGATGTTTCCAGTGAAGCTCAACGGAAATTCAGTCCGGATCCAATCTTTACATTCCTCCATGCTTATGGGTTGCTCATGCAAG
Seq C2 exon
ATCAAGTGCTGGACGCCATTCAGGAGCTGGAGATGCTGAAGGAGAGAAGAGACGTTTCACTTTGTGCGCTCATGGCTCTGGTTTATGCCCACAAGAAACGCCCAAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCAGCGGAGTTTATTTG
R:
TGAGCGCACAAAGTGAAACGT
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]