HsaEX6016378 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166805904-166810353:-
Coord C1 exon
chr2:166810195-166810353
Coord A exon
chr2:166806105-166806234
Coord C2 exon
chr2:166805904-166806014
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTATTTCCATTTAGACT
3' ss Score
7.72
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCGGCGCGACCCCGCCCCTCCCGCTGGGGCCCGGGGCGCTAGAGCGCTCCGGGAGGCTAGGGGAGCTGAATTCTGCGTCTTCCTTTAGGCTGCGGCGAGACAATCCCCAGAGCCCCGCGGCCCGGCCTCGGGGCAGCCATGGACTCGCAGGAATTGAAG
Seq A exon
ACTTTGATTAATTACTATTGTCAAGAGAGATATTTCCATCATGTATTACTGGTTGCCAGTGAAGGAATTAAGAGGTATGGAAGTGATCCAGTCTTCAGGTTTTATCATGCCTATGGCACATTAATGGAAG
Seq C2 exon
GTAAAACTCAAGAAGCTCTTCGAGAATTTGAGGCTATTAAAAATAAACAAGATGTATCACTTTGTTCTCTACTTGCACTGATATATGCCCATAAAATGAGTCCTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGCGCTCCGGGAG
R:
TGGATTAGGACTCATTTTATGGGCA
Band lengths:
232-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)