RnoEX6017146 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52356248-52361060:-
Coord C1 exon
chr3:52361040-52361060
Coord A exon
chr3:52356454-52356583
Coord C2 exon
chr3:52356248-52356358
Length
130 bp
Sequences
Splice sites
3' ss Seq
TAGTCATTATTTCCTTGTAGACA
3' ss Score
5.13
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
ATGGACTCCCAGGGGCTGAAG
Seq A exon
ACACTGATCAATTACTATTGTCAAGAGAGATACTATCACCATGTGCTCCTTGTGGCCAGTGAAGGGATGAAGAAGTATAGCAGTGACCCAGTCTTCCGATTTTACCATGCCTACGGCACACTAATGGAGG
Seq C2 exon
GTAAAGCTCAAGAAGCCCTTCGGGAGTTTGAGGCCATTAAAAATAAACAAGACGTGTCACTGTGTTCCCTGATGGCGCTGATGTATGTCCATAAAATGAGCCCCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCCCAGGGGCTGAAG
R:
CTGGATTGGGGCTCATTTTATGGA
Band lengths:
130-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]