BtaEX6009396 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30433135-30439147:+
Coord C1 exon
chr2:30433135-30433182
Coord A exon
chr2:30438818-30438947
Coord C2 exon
chr2:30439037-30439147
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTATTTCCTTTTAGGCT
3' ss Score
10.66
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGCCTGCGGCCTGGCCTTTGGGAAGCCATGGACTCGCAGGGGCTGAAG
Seq A exon
GCTTTGATTAATTACTACTGTCAGGAGAGATATTTCCACCATGTGTTACTTGTTGCCAGTGAGGGAATGAAGAGCTACGGCAGTGACCCAGTCTTCAGGTTTTATCATGCCTATGCTACGTTAATGGAAG
Seq C2 exon
GTAAAATTCAAGAAGCTCTTCGAGAATTTGAGGCTATTAAAAATAAACAAGATGTATCACTTTGTTCTCTAATTGCACTGATATACGCTCATAAAATGAGCCCTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCCTTTGGGAAGCCAT
R:
TCATTTTATGAGCGTATATCAGTGCA
Band lengths:
138-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]