MmuEX6101719 @ mm10
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66251894-66256617:-
Coord C1 exon
chr2:66256514-66256617
Coord A exon
chr2:66252103-66252232
Coord C2 exon
chr2:66251894-66252004
Length
130 bp
Sequences
Splice sites
3' ss Seq
TAGCCACCATTTCCTTGCAGACG
3' ss Score
6.57
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AGGGTTTGAGGGCCCGGGAAGTGGGTCTGAACCCCTAACCCTGCGGCGGGCAGCGGTGGGCACCCTCCGGGTAGCCGGCGGCCATGGACTCCCAGGGGCTGAAG
Seq A exon
ACGCTGATTAACTACTATTGTCAAGAGCGCTATTATCACCACGTGCTCCTTGTTGCCAGTGAAGGGATGAAGAAGTATAGCAGCGACCCAGTCTTCCGATTTTACCACGCCTACGGCACACTGATGGAGG
Seq C2 exon
GTAAAGCGCAAGAAGCCCTTCGGGAGTTTGAGGCCATTAAAAACAAACAAGACGTGTCACTGTGTTCTCTGATGGCGCTGATGTATGTCCATAAAATGAGCCCCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'1-3,'1-2,5-3=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGGGCCCGGGAAGT
R:
TGGATTGGGGCTCATTTTATGGA
Band lengths:
210-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types