GgaEX0016402 @ galGal3
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21131985-21133044:+
Coord C1 exon
chr7:21131985-21132005
Coord A exon
chr7:21132134-21132263
Coord C2 exon
chr7:21132934-21133044
Length
130 bp
Sequences
Splice sites
3' ss Seq
CGGGTTCGTCTCTCTCGCAGGCC
3' ss Score
10.18
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATGGACGCTGCAGTGCAGCAG
Seq A exon
GCCCTGCTCAACTACTACTGCCAGGAATGCTACTTCCACCACGTCCGGGCTGCGGCGGAGGAGGCGCTGGGCCGGCTGGGCAGCGACCCGGTGTTCCAATTCTACCGGGCGTACGGCGCGCTGCGCACAG
Seq C2 exon
GTGATGTCCAAGAGAGTATTCGACAACTGGAATCCATTAAGAACAAACAGGAGGTGTCACTTTGTGCAATGATGGCGCTGATCTACGCCCACAAAAAGAGCCCTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]