RnoEX6038275 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128622428-128625645:+
Coord C1 exon
chr8:128622428-128622543
Coord A exon
chr8:128624143-128624272
Coord C2 exon
chr8:128625535-128625645
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTCCCATGCAGGCT
3' ss Score
11.42
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AACTTCCGGCTGTGAGCTGGGCTGCGAATTGGGCGGCCAGAGCTGGGAATCCCGCTCAGCCGGGCATCACCTGAAGCCGGGCCGCAGCCATGAGCAGCGATGACTCCTCCCTCATG
Seq A exon
GCTTCGATCATTTACTACTGCCAGGAAAAGTACTTCCACCACGTGCTGCAGGCTGCCAATGTGGGCCTAGAGAGGTACAGCTGCGACCCTGTGCTGCAGTTCTTCAGAGCTTATGGGGTCCTTGGGGAAG
Seq C2 exon
ACCGTATCCATGATGCCATCAGTGAGCTGGAGAGCCTCCAAAGCCACCCAGACACGTCCCTGTGCGCGGTCATCGCTCTGCTTTATGCTCACAAATGCTGTGACACCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCCGGCTGTGAGCT
R:
ACAGCATTTGTGAGCATAAAGCA
Band lengths:
217-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]