HsaEX6016378 @ hg38
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165943219-165953843:-
Coord C1 exon
chr2:165953685-165953843
Coord A exon
chr2:165949595-165949724
Coord C2 exon
chr2:165943219-165943341
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTATTTCCATTTAGACT
3' ss Score
7.72
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCGGCGCGACCCCGCCCCTCCCGCTGGGGCCCGGGGCGCTAGAGCGCTCCGGGAGGCTAGGGGAGCTGAATTCTGCGTCTTCCTTTAGGCTGCGGCGAGACAATCCCCAGAGCCCCGCGGCCCGGCCTCGGGGCAGCCATGGACTCGCAGGAATTGAAG
Seq A exon
ACTTTGATTAATTACTATTGTCAAGAGAGATATTTCCATCATGTATTACTGGTTGCCAGTGAAGGAATTAAGAGGTATGGAAGTGATCCAGTCTTCAGGTTTTATCATGCCTATGGCACATTAATGGAAG
Seq C2 exon
GGACACGTTTTGAAAGCATGGCTTGATATTACAAGAGGAAAAGAGCCTTACACTAAAAAAGCACTGAAGTATTTTGAAGAGGGACTCCAAGATGGGAATGATACTTTTGCTCTGCTGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134241=TPR_12=PD(43.9=70.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGCGCTCCGGGAG
R:
ACCCAGCAGAGCAAAAGTATCA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains