DreEX6096682 @ danRer10
Exon Skipping
Gene
ENSDARG00000101928 | GORASP1 (2 of 2)
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr24:41163092-41167905:+
Coord C1 exon
chr24:41163092-41163178
Coord A exon
chr24:41165830-41165960
Coord C2 exon
chr24:41167794-41167905
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTTGACTGTATTTGTGCAGTCG
3' ss Score
5.57
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGTGGAAGTGAATTCTCCGGCTGAACTGGCGGGACTGAAGCCTTATTCGGACTATATCATTGGTGCCGATCAGGTTCTACAGGAA
Seq A exon
TCGGAGGACTTTTTCTCGCTGATCGAGGCGTGTGAAGGTAAATCGCTGAAGCTTCTGGTCTACAACACACACACTGACCGCTGTCGAGAAGTGCTCATCACTCCCAATGCAGCCTGGGGTGGAAACGGCAG
Seq C2 exon
TCTTGGCTGTGACGTCGGGTTTGGATACCTGCATCGCATCCCCATGTGTCCCGTCACATCTGAACAACACCAAAACACACCTGAACACCAGGAAAACAAGCACCGCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101928-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(21.2=100)
A:
PF044959=GRASP55_65=FE(32.1=100)
C2:
PF044959=GRASP55_65=PD(11.7=42.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGTGAATTCTCCGGC
R:
TCAGAGCGGTGCTTGTTTTCC
Band lengths:
196-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]