GgaEX1027012 @ galGal3
Exon Skipping
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5193360-5194606:+
Coord C1 exon
chr2:5193360-5193446
Coord A exon
chr2:5193790-5193920
Coord C2 exon
chr2:5194465-5194606
Length
131 bp
Sequences
Splice sites
3' ss Seq
ACTATTGTTTCTTTTCTTAGTCA
3' ss Score
6.86
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GATGTTGAACCCGCATCTCCTGCAGCTGTAGGTGGATTGCAGCCATACACTGACTACATTGTTGGATCTGATCAGATTCTGCAGGAG
Seq A exon
TCAGAAGATTTCTTCTCGCTGATTGAGTCCCATGAGGGAAAGCCGCTGAAGCTGATGGTTTATAACACTGAAGCAGACTCCATTCGAGAGGTAGTTGTGACTCCCAATGGAGCTTGGGGTGGAGAAGGAAG
Seq C2 exon
TTTGGGATGTGGTATTGGATATGGCTATTTGCACAGGATTCCAACGCAGTCAGTAGTATCAAAGAAAAAGCCAGAAAGCAAACCACCTTCGCCCTTACCAGAAGCTGGAACTCCTGTACCATCTACTAATGGTTACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033-'5-12,'5-10,7-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.625
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
PF044959=GRASP55_65=FE(31.4=100)
C2:
PF044959=GRASP55_65=PD(11.7=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTGAACCCGCATCTCCT
R:
GATGGTACAGGAGTTCCAGCT
Band lengths:
210-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]