MmuEX6069851 @ mm10
Exon Skipping
Gene
ENSMUSG00000032513 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:MGI Symbol;Acc:MGI:1921748]
Coordinates
chr9:119929551-119930306:-
Coord C1 exon
chr9:119930220-119930306
Coord A exon
chr9:119929973-119930103
Coord C2 exon
chr9:119929551-119929761
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGACACTGTCTTTCTCCTAGTCA
3' ss Score
5.21
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GATGTGGAGCCCTCTTCACCTGCTGCCTTGGCCGGCCTGTGCCCTTACACAGACTACATAGTTGGCTCTGACCAGATTCTCCAGGAG
Seq A exon
TCAGAAGACTTCTTTACTCTCATTGAGTCCCATGAGGGGAAGCCTCTGAAGCTGATGGTGTATAACTCGGAGTCCGACTCCTGCCGGGAGGTGACTGTGACTCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq C2 exon
TCTGGGGTGTGGTATTGGTTATGGGTACCTGCATCGGATCCCAACGCAACCCTCCAGCCAGCACAAGAAGCCACCCGGTGCCACACCACCTGGCACTCCAGCTACGACCTCACAACTTACTGCCTTTCCTCTTGGTGCCCCACCACCTTGGCCTATCCCTCAGGACTCTTCTGGCCCAGAGTTGGGTTCCAGGCAGAGTGACTTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032513-'15-10,'15-8,19-10
Average complexity
ME(8_19-9_16[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.803
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
PF044959=GRASP55_65=FE(31.4=100)
C2:
PF044959=GRASP55_65=PD(11.7=22.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGAGCCCTCTTCACCT
R:
AGTCCTGAGGGATAGGCCAAG
Band lengths:
254-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types