HsaEX0028056 @ hg38
Exon Skipping
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1 [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr3:39100305-39101102:-
Coord C1 exon
chr3:39101016-39101102
Coord A exon
chr3:39100747-39100877
Coord C2 exon
chr3:39100305-39100503
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTGCTATGCGTTTCTCACAGTCC
3' ss Score
7.88
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GATGTGGAACCATCTTCACCTGCTGCCCTTGCCGGCCTGCGCCCCTACACAGACTATGTGGTTGGTTCGGACCAGATTCTCCAGGAG
Seq A exon
TCCGAGGACTTCTTTACGCTCATCGAGTCTCATGAGGGGAAGCCCTTGAAGCTGATGGTGTATAACTCCAAGTCAGACTCCTGCCGGGAGGTGACTGTAACTCCCAACGCAGCCTGGGGTGGAGAGGGCAG
Seq C2 exon
TCTGGGATGTGGCATTGGCTATGGGTATCTACACCGGATCCCAACTCAGCCCCCCAGCTACCACAAGAAGCCACCTGGCACCCCACCACCTTCTGCTCTACCACTTGGTGCCCCACCACCTGATGCTCTACCACCTGGACCCACCCCCGAGGACTCTCCTTCCCTGGAGACAGGTTCCAGGCAGAGTGACTACATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.145 A=0.205 C2=0.655
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
PF044959=GRASP55_65=FE(25.9=100)
C2:
PF044959=GRASP55_65=PD(11.7=23.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAACCATCTTCACCTGC
R:
GTCTCCAGGGAAGGAGAGTCC
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development