RnoEX6038258 @ rn6
Exon Skipping
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128613060-128613812:-
Coord C1 exon
chr8:128613726-128613812
Coord A exon
chr8:128613483-128613613
Coord C2 exon
chr8:128613060-128613270
Length
131 bp
Sequences
Splice sites
3' ss Seq
TAACACTGTGTCTCTCCTAGTCG
3' ss Score
7.85
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GATGTGGAGCCCTCTTCACCCGCTGCCTTGGCCGGCCTGCGCCCTTACACAGACTACATTGTTGGCTCTGACCAGATCCTCCAGGAG
Seq A exon
TCGGAAGACTTCTTCACTCTCATTGAGTCCCATGAGGGAAAGCCCCTGAAGCTGATGGTTTATAACTCTGAATCCGACTCCTGCCGGGAGGTGACTGTGACCCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq C2 exon
TCTGGGGTGTGGTATTGGTTACGGGTACCTGCACCGGATCCCAACGCAGCCCTCCAGCCAGTACAAGAAGCCACCCAGTGCCTCATCACCTGGCACTCCAGCTAAGACCCCACAACCTAATGCCTTTCCTCTTGGTGCCCCACCACCTTGGCCCATCCCTCAGGACTCTTCTGGCCCAGAGCTGGGTTCCAGGCAGAGTGACTACATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047-'10-5,'10-4,13-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.775
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
PF044959=GRASP55_65=FE(31.4=100)
C2:
PF044959=GRASP55_65=PD(11.7=22.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCCCTTACACAGACTAC
R:
TAGTCACTCTGCCTGGAACCC
Band lengths:
255-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]