DreEX6097908 @ danRer10
Exon Skipping
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11602271-11603885:-
Coord C1 exon
chr22:11603831-11603885
Coord A exon
chr22:11602962-11603061
Coord C2 exon
chr22:11602271-11602329
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTCATGCATCTTTGTTACAGTCA
3' ss Score
6.57
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACAGTTTATCGACATGGGCTTTATAGATAAAAGCAGGATTGCCATCTGGGGCTGG
Seq A exon
TCATACGGAGGTTACGTGACTTCAATGGTCCTGGGTGCTGGAAGTGGAGTGTTTAAATGTGGTATGGCTGTCGCGCCAGTGTCTAAATGGGAATATTATG
Seq C2 exon
ACTCTATCTACACGGAGCGGTACATGCTCACGCCAGCGGAGAATCAGGCATTTTATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(8.8=100)
A:
PF0032616=Peptidase_S9=FE(16.1=100)
C2:
PF0032616=Peptidase_S9=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTATCGACATGGGCTT
R:
ATCATAAAATGCCTGATTCTCCGCT
Band lengths:
114-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]