DreEX6098836 @ danRer10
Exon Skipping
Gene
ENSDARG00000061810 | si:dkey-110c1.10
Description
si:dkey-110c1.10 [Source:ZFIN;Acc:ZDB-GENE-050208-429]
Coordinates
chr22:20256969-20257481:-
Coord C1 exon
chr22:20257341-20257481
Coord A exon
chr22:20257135-20257260
Coord C2 exon
chr22:20256969-20257052
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGAGTCTTTCTCTGCTCTAGATG
3' ss Score
8.38
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
CATGTGTTTCAGCTGGAGCAGGAGGAGTACCTGCGAGAGGAGCTTCCCTGGAACCGTATTGAATTCAGTGATAATCAGCCATGCATTGCACTCATTGAAGGCCAGCTGGGCCTACTTGATCTTCTGGATGAAGAATGCAGA
Seq A exon
ATGCCAAAAGGTTCAGATGACAACTGGGCTCGAAAGCTTTATGACCAGCACCTAAACCATAGCCCTCATTTTCTTAAACCACGCATGTCCAACTCTGCATTCATTATTGTGCATTTTGCTGATAAG
Seq C2 exon
GTTCAGTACGAGTGTGATGGCTTTTTGGACAAGAACCGAGACACTGTATTTGAGGAGCCCATCAATATACTGAGAGCTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061810-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTTTCAGCTGGAGCAGG
R:
AGCTCTCAGTATATTGATGGGCT
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]