RnoEX0057417 @ rn6
Exon Skipping
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70623691-70633555:+
Coord C1 exon
chr18:70623691-70623831
Coord A exon
chr18:70632431-70632553
Coord C2 exon
chr18:70633472-70633555
Length
123 bp
Sequences
Splice sites
3' ss Seq
CGGGTCTCGTGCTTCTCCAGGTC
3' ss Score
9.88
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CATGTGTTCAAGCTGGAGCAAGAAGAGTATATGAAGGAGCAGATCCCGTGGACCTTGATTGACTTCTATGATAACCAACCGTGCATAGACCTCATAGAAGCCAAGCTGGGTATCCTGGACCTGTTGGATGAGGAGTGTAAG
Seq A exon
GTCCCCAAAGGAACTGATCAGAACTGGGCTCAGAAACTCTATGAACGGCACTCCAACAGTCAACACTTCCAGAAACCACGCATGTCCAACACGGCCTTCATTGTCATCCACTTTGCAGACAAG
Seq C2 exon
GTGGAATACCTTTCAGATGGTTTTCTGGAGAAAAACAGGGACACGGTATATGAAGAACAGATCAACATCCTGAAAGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.3=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
ENSRNOT00000019512fB9258
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCAAGCTGGAGCAAGA
R:
TGCTGGCTTTCAGGATGTTGA
Band lengths:
221-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]