HsaEX0041202 @ hg19
Exon Skipping
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:7603]
Coordinates
chr18:47479630-47488776:-
Coord C1 exon
chr18:47488636-47488776
Coord A exon
chr18:47480683-47480805
Coord C2 exon
chr18:47479630-47479713
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTATCTTGTGGTTCTGCAGGTC
3' ss Score
9.98
5' ss Seq
AAGGTGGCT
5' ss Score
2.88
Exon sequences
Seq C1 exon
CATGTTTTCAAACTGGAGCAAGAAGAATACATGAAGGAACAGATCCCTTGGACCCTGATTGATTTTTATGATAACCAACCTTGTATCGACCTCATTGAAGCCAAGCTGGGTATCTTGGACCTGTTGGATGAAGAATGTAAG
Seq A exon
GTCCCCAAAGGAACTGACCAGAACTGGGCTCAGAAGCTCTATGACCGGCACTCCAGCAGCCAGCACTTCCAGAAGCCCCGCATGTCCAACACGGCCTTCATCATCGTCCACTTTGCAGACAAG
Seq C2 exon
GTGGAGTACCTCTCTGATGGTTTTCTGGAGAAAAACAGAGACACGGTGTATGAAGAGCAGATCAATATCCTGAAGGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTCAAACTGGAGCAAGAAGA
R:
TGCTGGCCTTCAGGATATTGA
Band lengths:
221-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)