DreEX6084451 @ danRer10
Exon Skipping
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22456165-22457854:-
Coord C1 exon
chr21:22457714-22457854
Coord A exon
chr21:22457373-22457495
Coord C2 exon
chr21:22456165-22456248
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCTGCGTCTGACAGGTG
3' ss Score
10.68
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CATGTGTTTAAGCTGGAGCAAGAAGAGTACATGAAGGAGCAGATCCCCTGGACACTCATTGATTTCTATGATAACCAGCCGTGCATTGACCTCATTGAAGCCAAACTCGGTATCCTGGACCTTCTTGATGAAGAGTGTAAG
Seq A exon
GTGCCCAAAGGAACAGATCAGAACTGGGCGCAAAAGCTGTACAGCAAGCATTCAGGCAGCGGCCATTTCGAAAAGCCCAGGATGTCCAACAAGTCCTTTATTGTTGTTCATTTTGCAGATAAG
Seq C2 exon
GTTGAATATCAGTGTGACGGATTCCTGGAGAAGAACAGAGACACTGTTTATGAAGAGCAGATAAACATCCTCAAGGCCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTAAGCTGGAGCAAGA
R:
TGGCCTTGAGGATGTTTATCTGC
Band lengths:
218-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]