BtaEX6092654 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr24:50044137-50056366:-
Coord C1 exon
chr24:50056226-50056366
Coord A exon
chr24:50045159-50045281
Coord C2 exon
chr24:50044137-50044220
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGATTTTGTGAATCCACAGGTC
3' ss Score
9.18
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CACGTATTCAAGCTGGAGCAGGAGGAGTACATGAAGGAGCAGATCCCGTGGACCCTGATTGATTTCTATGATAACCAGCCTTGTATCGACCTCATAGAAGCTAAGCTGGGCATCTTGGACCTGTTGGATGAAGAATGTAAG
Seq A exon
GTCCCCAAAGGAACCGACCAGAACTGGACTCAGAAGCTCTATGACAGGCACTCTGGCAGCCAACACTTCCAGAAACCCCGCATGTCCAACAAGGCCTTCATTGTCATCCACTTTGCAGATAAG
Seq C2 exon
GTGGAGTACCTTTCAGATGGTTTTCTGGAGAAAAACAGAGATACCGTGTACGAAGAACAGATCAACATCCTGAAGGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455-'14-22,'14-21,15-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGCTGGAGCAGGAGGA
R:
CTTGCTGGCCTTCAGGATGTT
Band lengths:
220-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]