MmuEX6002396 @ mm9
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74813584-74822400:+
Coord C1 exon
chr18:74813584-74813724
Coord A exon
chr18:74821261-74821383
Coord C2 exon
chr18:74822317-74822400
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTGTGCTTATCCAGGTC
3' ss Score
9.01
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CATGTGTTCAAGCTGGAGCAAGAAGAATATATGAAGGAGCAGATCCCGTGGACTTTGATTGACTTCTACGATAACCAACCGTGTATAGACCTCATAGAGGCAAAGCTGGGCATCCTGGACCTGTTGGATGAGGAGTGTAAG
Seq A exon
GTCCCCAAAGGAACTGATCAGAACTGGGCCCAGAAACTCTACGAACGACACTCCAACAGCCAGCACTTCCAGAAACCACGCATGTCCAACACGGCCTTCATTGTCAACCACTTTGCAGATAAG
Seq C2 exon
GTGGAGTACCTTTCAGATGGTTTTCTAGAGAAAAACAGGGATACAGTATATGAAGAACAGATCAACATCCTGAAGGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-'18-18,'18-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCAAGCTGGAGCAAGA
R:
CTTGCTGGCCTTCAGGATGTT
Band lengths:
223-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: