MmuEX6002396 @ mm10
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74653930-74676756:+
Coord C1 exon
chr18:74653930-74654070
Coord A exon
chr18:74661607-74661729
Coord C2 exon
chr18:74676601-74676756
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTGTGCTTATCCAGGTC
3' ss Score
9.01
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CATGTGTTCAAGCTGGAGCAAGAAGAATATATGAAGGAGCAGATCCCGTGGACTTTGATTGACTTCTACGATAACCAACCGTGTATAGACCTCATAGAGGCAAAGCTGGGCATCCTGGACCTGTTGGATGAGGAGTGTAAG
Seq A exon
GTCCCCAAAGGAACTGATCAGAACTGGGCCCAGAAACTCTACGAACGACACTCCAACAGCCAGCACTTCCAGAAACCACGCATGTCCAACACGGCCTTCATTGTCAACCACTTTGCAGATAAG
Seq C2 exon
TTCCCATTAGTGGCTGATTTGTTCCACGATGACAAGGACTCTGCTCCAGCCACCAACACAGCTAAGAATCGATCATCTTCAAAGATCAACGTTCGCTCTTCCAGACCCCTCATCAAAGTCCCTAACAAGGAGCACAAGAAATCCGTGGGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.481
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.3=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(7.5=100)
Main Skipping Isoform:
ENSMUST00000121875fB13271
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGATCCCGTGGACTTTG
R:
TAGCCCACGGATTTCTTGTGC
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types