GgaEX7011249 @ galGal4
Exon Skipping
Gene
ENSGALG00000012984 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr28:1135257-1135800:-
Coord C1 exon
chr28:1135660-1135800
Coord A exon
chr28:1135459-1135581
Coord C2 exon
chr28:1135257-1135340
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGACCCCTCTGCCCTTCAGATG
3' ss Score
9.48
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CACGTCTTCAAGCTGGAGCAGGAGGAGTACGTGGCTGAGGAGATCCCGTGGGTCTTCATTGACTTCTATGACAACCAGCCGTGCATTGAGCTCATTGAGGGCCGACTGGGTGTGCTGGACCTGCTGAATGAGGAGTGCAAG
Seq A exon
ATGCCCCAGGGCAGTGATGGGAGCTGGGCCCAGAAGCTGTACCAGACCCATCTCGGCAGCTCCCACTTCCAGAAGCCCAAGAGGCCGATGGATGCCTTCGTTGTGTGCCACTTTGCCGGCAAG
Seq C2 exon
GTGGAGTATCAGTGTGATGGGTTTGTGGAGAAGAACAGAGACACCATCCCCGAGGAGCTGGTGGGGCTGCTGAGAGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012984-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTCTTCAAGCTGGAGCAG
R:
GCTCTCAGCAGCCCCACC
Band lengths:
218-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]