DreEX6099099 @ danRer10
Exon Skipping
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22340661-22351249:-
Coord C1 exon
chr22:22351088-22351249
Coord A exon
chr22:22347603-22347686
Coord C2 exon
chr22:22340661-22340802
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTTTTACTCTTTTTTTCAAGGTG
3' ss Score
9.41
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGCGCCCACCTGGCCATGATCGACACTCTGATGATGGCGTATACAGTGGAGACGGTGAGCGTGGAGAAGGTGATGGCCTGCATGCACCAATACTCCACCGATTATCCAGACGGAGACGTGCCCTACGACACAGAGGATGCCGTCACCAGCTGGATGAATAAG
Seq A exon
GTGAATGAATACTTGAAGGAAATCATAATGCAGGAGCAAAGGCGGATGGAGGCGCAGAACGCAGAGCCTGTTGAGAATCCAAAG
Seq C2 exon
GCGCGTTACAGGAAGGAGCAGGTTCTGCCCAAGTGTTTACCGTGGATCCCTCCGGTGGACAACCTGCTGAAGGACAGCACAGATGGCTGTGCTCTCGCCGCCCTGCTGCACTTCTACTGCCCCACCACCGTCAGCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173-'4-7,'4-4,6-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.435 C2=0.008
Domain overlap (PFAM):
C1:
PF102214=DUF2151=FE(46.1=100)
A:
PF102214=DUF2151=FE(23.5=100)
C2:
PF119713=CAMSAP_CH=PU(48.8=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGTGGAGAAGGTGATG
R:
GTCCTTCAGCAGGTTGTCCAC
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]