RnoEX0016547 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53179139-53186162:-
Coord C1 exon
chr13:53186001-53186162
Coord A exon
chr13:53179717-53179800
Coord C2 exon
chr13:53179139-53179171
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTACATATCTTAAGGTA
3' ss Score
8.19
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGTGCACACTTGGCCATGATCGATACTCTAATGATGGCTTACACTGTAGAGATGGTCAGCATAGAGAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATCGAGGATGCTGTCATGTACTGGATAAATAAG
Seq A exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACACGGCTGAAGCTCCAGGAGGTCAAAAG
Seq C2 exon
TCTCCTTCCAAATGGTTTTGGAAACTGGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741-'6-9,'6-8,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.571 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(5.7=16.7)
A:
PF0030726=CH=FE(17.1=100)
C2:
PF0030726=CH=FE(6.3=100)
Main Skipping Isoform:
ENSRNOT00000091015fB2313
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATGATCGATACTCTAATGA
R:
GAACCAGTTTCCAAAACCATTTG
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]