MmuEX0009011 @ mm10
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136293280-136304456:-
Coord C1 exon
chr1:136304295-136304456
Coord A exon
chr1:136297742-136297825
Coord C2 exon
chr1:136293280-136293421
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGTGATTTTTACATTTTAAGGTA
3' ss Score
6.92
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
AGTGCACATTTGGCTATGATTGATACTCTAATGATGGCTTACACTGTAGAGATGATCAGCATAGAAAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATTGAGGATGCTGTCATGTACTGGATGAATAAG
Seq A exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACCCAGCTGAAGCTCCAGGAGGCCAAAAG
Seq C2 exon
GCTCGTTACAGGAAGGAACAAACACTGCTTAAGCAACTGCCTTGCATTCCATTGGTGGAAAACTTGTTGAAGGATGGGACCGACGGCTGCGCACTAGCTGCCCTCATTCACTTCTACTGCCCTGCTGTTGTCCGGCTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570_MULTIEX1-2/3=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.652 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(5.5=16.7)
A:
PF0030726=CH=FE(16.5=100)
C2:
PF0030726=CH=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACAGATCTGCCCTATGA
R:
ACAGCAGGGCAGTAGAAGTGA
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types