GgaEX0002634 @ galGal4
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr8:1387332-1397187:-
Coord C1 exon
chr8:1397026-1397187
Coord A exon
chr8:1396300-1396383
Coord C2 exon
chr8:1387332-1387473
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATAAGCTTTTTTGTCTCTAGGTA
3' ss Score
10.19
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTGCTCATTTGGCTATGATCGATACTCTTATGATGGCGTATACCGTAGAGATGGTCAGCGTTGAGAAAGTGATTGCGTGCACTCAGCAGTATTCGTCTTTCTTCCAAGCGACGGATCTACCTTATGACATAGAGGATGCTGTCATGTTCTGGATAAACAAG
Seq A exon
GTAAATGAACATTTGAAAGACATAATGGAACAGGAACAAAAACTTAAAGAGCATCACAGTGCAGAATCTGCAGGAGGTCAGAAG
Seq C2 exon
GCCCGTTACAGGAAGGAACAAACATTGCTCAAGCAGCTGCCTTGCATTCCATTGGTGGAAAATTTGCTGAAAGATGGTACAGATGGTTGTGCTTTAGCAGCCCTCATCCACTTCTACTGTCCAGATATCGTTAAACTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145_MULTIEX1-1/9=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.321 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(5.7=16.7)
A:
PF0030726=CH=FE(17.1=100)
C2:
PF0030726=CH=FE(29.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGCGACGGATCTACCTT
R:
AGAAGTGGATGAGGGCTGCTA
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]