GgaEX0002634 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1402785-1408177:-
Coord C1 exon
chr8:1408016-1408177
Coord A exon
chr8:1407290-1407373
Coord C2 exon
chr8:1402785-1402817
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATAAGCTTTTTTGTCTCTAGGTA
3' ss Score
10.19
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTGCTCATTTGGCTATGATCGATACTCTTATGATGGCGTATACCGTAGAGATGGTCAGCGTTGAGAAAGTGATTGCGTGCACTCAGCAGTATTCGTCTTTCTTCCAAGCGACGGATCTACCTTATGACATAGAGGATGCTGTCATGTTCTGGATAAACAAG
Seq A exon
GTAAATGAACATTTGAAAGACATAATGGAACAGGAACAAAAACTTAAAGAGCATCACAGTGCAGAATCTGCAGGAGGTCAGAAG
Seq C2 exon
TCTCCTACCAAATGGTATTGGAAACTGGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'2-5,'2-2,3-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.452 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(5.7=16.7)
A:
PF0030726=CH=FE(17.1=100)
C2:
PF0030726=CH=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTATGATGGCGTATACCGT
R:
GAACCAGTTTCCAATACCATTTGG
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]