BtaEX6070986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81301529-81303973:+
Coord C1 exon
chr16:81301529-81301546
Coord A exon
chr16:81301944-81302018
Coord C2 exon
chr16:81303941-81303973
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATAAATAACATACATTCAAGAAC
3' ss Score
-0.16
5' ss Seq
AAAGAGATA
5' ss Score
-12.37
Exon sequences
Seq C1 exon
AATTTGGATTTGAACAAT
Seq A exon
AACTTAAAAAACCTGAAAAAGTCATCTCAAGAATCAGAAAACTCAAGAATCAGAAAAATACCAGCTTCCCACAAA
Seq C2 exon
TCTCCTTCCAAATGGTTTTGGAAACTGGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153-'7-9,'7-8,8-9=AN
Average complexity
A_C3
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.240 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]