DreEX6028986 @ danRer10
Exon Skipping
Gene
ENSDARG00000059965 | camsap2b
Description
calmodulin regulated spectrin-associated protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-070912-80]
Coordinates
chr2:45473135-45491213:+
Coord C1 exon
chr2:45473135-45473296
Coord A exon
chr2:45486307-45486384
Coord C2 exon
chr2:45491072-45491213
Length
78 bp
Sequences
Splice sites
3' ss Seq
TATTATTTTACATTTCATAGGTA
3' ss Score
7.71
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGCTCTCACCTGGCAATGATTGACACGTTAATGATGGCCTACACGGTTGAAATGGTCAGCGTAGAGCGAGTTCTAAGCTGCATCCAGAAATTCACTCCTTTCCTTCCTGAGGAAGACTTTCCTTATGATGCTGAAGAGGCTGTGACAACATGGATCAACAAG
Seq A exon
GTAAATGAACATCTGAGAGAGATTTTGGCCTTGGAAAAGAATGCTAAAGGTGCAGACGAACCCTCCACTCTTCAAAAG
Seq C2 exon
GGGCGTTACAGAAGGGACGAATCTAAAGCTCATCCAGCACTTTGTGTCCCCCTAGTGGACAGTCTTTTGAAGGACAACACAGACGGCTGTGCTCTGGCTCTGCTGCTGCACTTTTACTGTCCTGATGCTGTGCCACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059965-'2-5,'2-2,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.173 C2=0.037
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(6.2=16.7)
A:
PF0030726=CH=FE(17.2=100)
C2:
PF119713=CAMSAP_CH=PU(48.8=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTACACGGTTGAAATGGT
R:
ACTAGGGGGACACAAAGTGCT
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]