DreEX6099777 @ danRer10
Exon Skipping
Gene
ENSDARG00000099446 | slit1b
Description
slit homolog 1b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-4]
Coordinates
chr22:34927372-34929907:-
Coord C1 exon
chr22:34929836-34929907
Coord A exon
chr22:34928157-34928320
Coord C2 exon
chr22:34927372-34927516
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTGTCAGCCG
3' ss Score
5.24
5' ss Seq
CTGGTACAC
5' ss Score
2.74
Exon sequences
Seq C1 exon
CACTCTGAACAACAACAACATCAGTGCAATCCCCATTTCCAGTTTTAACCACATGCCCAAATTACGAACATT
Seq A exon
CCGTCTGCACTGGAACTCTCTGCGCTGTGACTGTCACCTGTCGTGGCTCTCTCAGTGGCTCCGGCAGAGGCCAGCGCTCGGTCTTTACACCCAGTGCAGTTCTCCAGCGCACCTGCACGGACTTAACCTGGCAGAGCTGCAGAAGAAGGACTTCACCTGCGCTG
Seq C2 exon
GTGCTCTGGACTCCAGTCCTCAGCCGTGTGGTCTTGCGTCCGGCTCTTGTCCGCCCATGTGCTCCTGCACCAACAATATTGTGGACTGTCGAGGAAAAGGTCTGACGGCAATTCCAGCAAACATGCCCGAGAGTATGACTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099446-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(37.7=100)
A:
PF138551=LRR_8=PD(11.5=12.7),PF0146319=LRRCT=WD(100=45.5)
C2:
PF0146319=LRRCT=PD(0.1=0.0),PF0146213=LRRNT=WD(100=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAACAACAACATCAGTGCA
R:
TCTCAGTCATACTCTCGGGCA
Band lengths:
211-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]