DreEX6099788 @ danRer10
Exon Skipping
Gene
ENSDARG00000099446 | slit1b
Description
slit homolog 1b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-4]
Coordinates
chr22:34896713-34902233:-
Coord C1 exon
chr22:34902165-34902233
Coord A exon
chr22:34900920-34900991
Coord C2 exon
chr22:34896713-34896784
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTGCTTCATTCCAGCGA
3' ss Score
8.73
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
ATATCTGGATGGAAACGTGTTTGTGTCGATTCCTCAAGAGCTCTCGGCCTTCAGACAACTGCAGCTGCT
Seq A exon
CGACTTGAGCAACAACAAAATCAGCTCCTTGACCAACACGTCTTTCACCAACATGAGCCAGCTGACCACACT
Seq C2 exon
AATCCTGAGCTATAACGCTCTGCGCTGTATTCCTCCTCTGGTGTTTGGTGGTCTCTCGTCTCTCCGCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099446-'22-27,'22-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(50.0=100)
A:
PF127992=LRR_4=PD(37.0=68.0),PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=PU(40.0=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATGGAAACGTGTTTGTGT
R:
CAGGCGGAGAGACGAGAGAC
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]