DreEX6099960 @ danRer10
Exon Skipping
Gene
ENSDARG00000023236 | kcnh1b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1b [Source:ZFIN;Acc:ZDB-GENE-121128-4]
Coordinates
chr22:37961769-37980848:+
Coord C1 exon
chr22:37961769-37962161
Coord A exon
chr22:37969044-37969473
Coord C2 exon
chr22:37980649-37980848
Length
430 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGCTCCTCTTGCAGGGC
3' ss Score
11.77
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTGTTGCAGCTGGGATCAGACATTCTCCCGCAGTACAAGCAAGAGGCTCCCAAAACGCCTCCGCACATCATCCTGCACTACTGCACCTTCAAGACCACCTGGGACTGGGTGATCCTCATCCTCACCTTCTACACCGCCATCATGGTGCCCTACAACGTGTCCTTTAAGACCAAGCAGAACAACGTCACCTGGCTGGTGGTGGACAGCATTGTGGATGTGATTTTCCTGGTGGACATTGTGCTCAACTTCCACACCACCTTTGTTGGGCCGGCGGGAGAGGTGATCTCAGACCCCAAACTGATCCGTATGAACTACGTCAAGACCTGGTTCGTGATCGACCTGCTGTCCTGCCTGCCGTACGACGTCATTAACGCCTTCGAGAATGTTGACGAG
Seq A exon
GGCATCAGCAGTCTGTTCAGCTCTCTGAAGGTGGTCCGGTTGCTGCGTCTCGGCCGTGTGGCCCGTAAACTGGACCACTACATTGAATACGGCGCAGCAGTGCTGGTTTTACTGGTGTGTGTGTTTGGTCTGGCCGCTCACTGGCTGGCCTGCATCTGGTACAGCATCGGAGACTATGAGGTTATCGATCAAGACGCCAACATGGTGCGCACTGACAGCTGGCTGTATCTGCTGGGCGAAGCTGTGGGTCAGCCCTATCACTTCAACGCCAGCGGCTCAGGGAAGTGGGAAGGGGGTCCCAGCAAGGATTCGGTCTACATCACGTCTCTGTATTTCACCATGACCAGCCTGACCAGCATTGGATTTGGGAACATCGCTCCCACCACCGACGGGGAGAAGATCTTCGCCGTGGCCATGATGATGATCGGAT
Seq C2 exon
CTCTCCTTTATGCCACCATCTTTGGTAACGTAACCAACATCTTCCAGCAAATGTACGCCAACACCAACCGCTACCACGAGATGTTAAACAGCGTGAGAGATTTCCTGAAGCTCTACCAGGTTCCCAAAGGCCTCAGCGAGCGGGTCATGGATTATATCGTCTCCACGTGGTCCATGTCCAGAGGAATCGACACTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023236-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.5=49.6)
A:
PF0052026=Ion_trans=FE(65.0=100)
C2:
PF0052026=Ion_trans=PD(4.5=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGACTGGGTGATCCTCAT
R:
TGTTGGCGTACATTTGCTGGA
Band lengths:
358-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]