MmuEX6030128 @ mm10
Exon Skipping
Gene
ENSMUSG00000058248 | Kcnh1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
Coordinates
chr1:192276698-192413216:+
Coord C1 exon
chr1:192276698-192277171
Coord A exon
chr1:192337400-192337829
Coord C2 exon
chr1:192413017-192413216
Length
430 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCCATCCCCTTTCAGGGC
3' ss Score
12.84
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTCCTGCAGCTGGGTTCAGACATCCTTCCCCAGTACAAGCAAGAGGCGCCAAAGACACCCCCTCACATCATCCTACACTACTGTGTCTTTAAGACCACGTGGGATTGGATCATCTTGATCCTGACCTTCTACACAGCCATCTTGGTCCCTTACAACGTCTCCTTTAAAACCAGGCAGAATAATGTGGCCTGGCTGGTGGTGGACAGCATCGTGGATGTCATCTTTTTGGTGGACATTGTTTTGAATTTTCACACCACCTTTGTCGGGCCAGCGGGGGAAGTGATATCTGACCCCAAACTTATCCGCATGAACTACCTGAAGACGTGGTTTGTGATCGACCTTCTGTCCTGTTTGCCGTATGACGTCATCAACGCTTTTGAGAACGTGGATGAGGTTAGTGCCTTTATGGGTGATCCAGGGAAGATTGGTTTTGCTGATCAGATCCCACCACCACTGGAGGGGAGAGAGAGTCAG
Seq A exon
GGCATCAGCAGCCTGTTCAGTTCTCTGAAAGTTGTGCGGCTGCTCCGTCTCGGGCGAGTGGCCCGCAAACTGGATCATTACATCGAGTATGGAGCCGCGGTACTGGTCCTGTTGGTGTGCGTGTTTGGGCTTGCTGCCCACTGGATGGCCTGCATCTGGTACAGCATTGGGGACTATGAGATCTTTGATGAAGACACCAAGACCATCCGCAACAACAGCTGGCTCTACCAACTGGCATTGGACATCGGCACTCCATACCAGTTTAATGGGTCTGGTTCAGGGAAGTGGGAAGGTGGGCCAAGCAAGAACTCTGTCTACATCTCCTCGCTGTACTTCACCATGACAAGTCTCACCAGTGTGGGCTTTGGTAACATTGCCCCATCCACAGACATCGAGAAGATCTTCGCAGTGGCCATCATGATGATTGGCT
Seq C2 exon
CTCTTCTGTATGCCACCATCTTTGGGAACGTGACAACCATTTTCCAGCAGATGTACGCCAACACCAACAGGTACCACGAGATGCTCAACAGTGTCCGGGATTTCCTGAAGCTCTACCAGGTGCCCAAAGGGCTGAGTGAGCGGGTCATGGACTACATTGTGTCCACCTGGTCCATGTCCCGAGGCATCGACACAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058248-'8-11,'8-9,13-11=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(37.2=58.2)
A:
PF0052026=Ion_trans=FE(57.9=100)
C2:
PF0052026=Ion_trans=PD(4.0=14.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACACCACCTTTGTCGGG
R:
AGAGCTTCAGGAAATCCCGGA
Band lengths:
342-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types