RnoEX0046013 @ rn6
Exon Skipping
Gene
ENSRNOG00000003841 | Kcnh1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RGD Symbol;Acc:68398]
Coordinates
chr13:111009573-111138605:+
Coord C1 exon
chr13:111009573-111009965
Coord A exon
chr13:111068035-111068464
Coord C2 exon
chr13:111138406-111138605
Length
430 bp
Sequences
Splice sites
3' ss Seq
CCGTGTCCATTCTGTTCTAGGGC
3' ss Score
11.53
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTCCTGCAGCTGGGTTCAGACATCCTCCCCCAGTACAAGCAAGAGGCGCCAAAGACACCCCCTCACATCATCCTACACTACTGTGTCTTTAAGACCACATGGGATTGGATCATCTTGATCCTGACCTTCTACACAGCCATCCTGGTCCCTTACAACGTCTCCTTTAAAACCAGGCAGAATAACGTGGCCTGGCTGGTGGTGGACAGCATCGTGGATGTCATCTTTTTGGTGGACATTGTCTTGAATTTTCACACCACCTTTGTCGGGCCAGCGGGGGAAGTGATCTCTGACCCCAAACTTATCCGCATGAACTACCTGAAGACGTGGTTTGTGATCGACCTTCTCTCCTGTTTGCCATATGACGTCATCAACGCTTTTGAGAACGTGGATGAG
Seq A exon
GGCATCAGCAGCCTGTTCAGTTCTCTGAAAGTCGTGCGGCTGCTCCGTCTCGGACGAGTGGCCCGCAAGCTGGACCATTATATCGAGTACGGAGCGGCGGTACTGGTCCTGCTGGTGTGCGTGTTCGGGCTGGCTGCCCACTGGATGGCCTGCATCTGGTACAGCATTGGGGACTATGAGATCTTTGATGAAGACACCAAGACCATCCGTAACAACAGCTGGCTCTACCAACTGGCATTGGACATTGGCACTCCATACCAGTTTAATGGGTCTGGTTCGGGGAAGTGGGAAGGCGGGCCAAGCAAGAACTCCGTATACATTTCCTCGCTGTACTTCACCATGACAAGTCTCACCAGTGTGGGCTTTGGTAACATCGCCCCATCCACAGACATCGAGAAGATCTTCGCCGTAGCCATCATGATGATTGGCT
Seq C2 exon
CCCTTCTGTATGCCACCATCTTTGGGAATGTGACGACCATTTTCCAGCAGATGTATGCCAACACCAACAGGTATCATGAGATGCTCAACAGCGTCCGGGATTTCCTGAAGCTCTACCAGGTGCCCAAGGGGCTGAGCGAGCGGGTCATGGACTACATTGTGTCTACCTGGTCCATGTCCCGCGGCATCGACACGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003841-'11-18,'11-15,15-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(29.5=49.6)
A:
PF0052026=Ion_trans=FE(65.0=100)
C2:
PF0052026=Ion_trans=PD(4.5=14.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATCCTGGTCCCTTACAA
R:
GGACGCTGTTGAGCATCTCAT
Band lengths:
355-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]