GgaEX6029341 @ galGal4
Exon Skipping
Gene
ENSGALG00000009877 | KCNH1
Description
potassium channel, voltage gated eag related subfamily H, member 1 [Source:HGNC Symbol;Acc:HGNC:6250]
Coordinates
chr3:21705712-21752152:+
Coord C1 exon
chr3:21705712-21706104
Coord A exon
chr3:21717687-21718116
Coord C2 exon
chr3:21751953-21752152
Length
430 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTTTATCCTTCTAGGGC
3' ss Score
11.19
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTACTGCAGCTGGGCTCCGAAATTCTCCCACAGTACAAACAAGAAGCACCAAAGACTCCGCCACATATAATTTTGCATTATTGTGTTTTCAAGACTACCTGGGACTGGATCATCTTGATTTTAACCTTCTACACTGCTATTTTGGTCCCTTACAATGTCTCCTTTAAAACCAAACAGAACAATGTGGCATGGCTAGTAGTGGACAGCATTGTAGATGTCATTTTTTTGGTAGACATCGTACTTAATTTCCATACCACCTTTGTGGGGCCAGCAGGAGAGGTGATCTCTGACCCAAAGCTGATTCGCATGAATTACTTGAAGACCTGGTTTGTGATCGATCTGCTCTCATGCTTGCCATATGATGTGATCAACGCATTTGAGAATGTTGATGAG
Seq A exon
GGCATCAGTAGCCTCTTCAGTTCACTTAAAGTGGTCAGACTACTTCGTCTGGGTCGTGTTGCTCGGAAATTGGATCACTACATAGAATATGGAGCAGCAGTCTTGGTTCTGCTGGTGTGTGTGTTTGGTCTCGCAGCACACTGGTTGGCCTGCATTTGGTACAGCATAGGAGATTATGAAGTTATCGATGAGGATACAAACACAATCCGAACTGAGAGCTGGCTCTATCAGCTGGGAATGTCAATAGGAACACCTTACCGTTTTAACACGTCTGGCTTTGGAAAATGGGAAGGCGGACCAAGCAAGGATTCTGTCTACATCTCCTCACTGTATTTTACAATGACCAGCCTCACTAGTGTTGGATTTGGAAACATTGCACCGACTACAGACGGGGAGAAGATCTTTGCTGTTGCAATGATGATGATTGGCT
Seq C2 exon
CCCTTCTGTATGCAACCATTTTTGGTAACGTGACAACCATATTTCAGCAAATGTATGCTAATACGAACAGATATCATGAAATGCTGAACAGTGTCCGAGACTTTCTAAAGCTCTACCAGGTCCCTAAAGGACTCAGTGAACGTGTGATGGATTACATTGTCTCCACCTGGTCAATGTCCAGAGGAATAGATACTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009877-'5-10,'5-7,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=45.8),PF0052026=Ion_trans=PU(29.5=49.6)
A:
PF0052026=Ion_trans=FE(65.0=100)
C2:
PF0052026=Ion_trans=PD(4.5=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGCTAGTAGTGGACAGC
R:
CCATCACACGTTCACTGAGTCC
Band lengths:
357-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]