DreEX6102104 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18977381-18983233:-
Coord C1 exon
chr25:18983102-18983233
Coord A exon
chr25:18979278-18979338
Coord C2 exon
chr25:18977381-18977531
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTGTATTTGCTTCTTTCAGGAA
3' ss Score
9.59
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATCCAGATATTCTCAATGGAGTGTACATGTCAGAGGCCTTGAACGACATCTTCATCAATAACTTCCAGAAAGATCCCACGCTCACCTGGCAGTATTTCTGCAGCCAAACGGGTTTCTTCAGACTTTATCCAG
Seq A exon
GAATCCGATGGACCCCTGATGCTAACGGTGTTGTGTCTTTTGACTGCAGAAACAGAAACTG
Seq C2 exon
GTACATCCAGGCCGCCACATCCCCTAAAGATCTCGTGATTGTGGTGGATGTGAGCGGCAGCATGAAGGGCCTAAAAATGACCATCGCCAAACACACCATCAACACCATCCTGGACACACTCGGGGAAAACGACTTTGTCAATGTTATCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(37.6=100)
A:
PF083996=VWA_N=PD(2.6=14.3)
C2:
PF137681=VWA_3=PU(24.7=80.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGATCCCACGCTCACCTG
R:
TTTTAGGCCCTTCATGCTGCC
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]