BtaEX6024829 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108786573-108791079:-
Coord C1 exon
chr5:108790948-108791079
Coord A exon
chr5:108787331-108787391
Coord C2 exon
chr5:108786573-108786723
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGAAGCCTTCTTTTCCCCAGGCA
3' ss Score
8.1
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ACCCAGATATCTTGAATGGAATCTACATGTCCGAAGCTCTGAACGCTGTCTTCGTGGAGAACTTCCAGAGAGACCCAACGCTGACCTGGCAGTACTTCGGCAGTTCCACGGGGTTCTTCCGCATCTACCCAG
Seq A exon
GCATCAAGTGGACGCCGGATGAGAACGGAGTCATCACCTTCGACTGCCGGAACCGTGGCTG
Seq C2 exon
GTACATACAAGCCGCCACCTCCCCGAAGGACATCGTGATCGTGGTGGACACAAGCGGCAGCATGAAGGGGCTGCGGATGACCATCGCCAAGCACACGGTCTCCACCATCCTGGACACGCTGGGGGAGAACGACTTCGTGAACATCATCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(37.6=100)
A:
PF083996=VWA_N=PD(2.6=14.3)
C2:
PF137681=VWA_3=PU(24.7=80.4)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCTGAACGCTGTCTTCG
R:
GTCCACCACGATCACGATGTC
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]