RnoEX6014849 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151305612-151328815:+
Coord C1 exon
chr4:151305612-151305743
Coord A exon
chr4:151328161-151328221
Coord C2 exon
chr4:151328665-151328815
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGCAGCCTTTGTTTCCCCAGGGA
3' ss Score
9.43
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
ACCCAGACATTTTAAATGGCGTCTATATGTCCGAAGCCCTGAACCCTGTGTTTGTGGAGAACTTTCAGAGAGACCCCACATTGACCTGGCAGTATTTTGGCAGTTCAACTGGGTTCTTCAGGATCTATCCAG
Seq A exon
GGATAAAGTGGACACCTGATGAAAATGGAGTCATCGCCTTCGACTGCAGAAACCGTGGCTG
Seq C2 exon
GTACATACAAGCCGCCACTTCTCCCAAGGACATCGTCATCCTGGTGGACATGAGCGGCAGCATGAAGGGGCTGAGGATGGCCATTGCCAAACACACCGTCACAACCATATTGGACACCCTGGGGGAGAACGACTTCGTGAACATCATCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'7-9,'7-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(37.6=100)
A:
PF083996=VWA_N=PD(2.6=14.3)
C2:
PF135191=VWA_2=PU(22.2=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCTGAACCCTGTGTTTG
R:
GATGTCCTTGGGAGAAGTGGC
Band lengths:
133-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]