DreEX6102635 @ danRer10
Exon Skipping
Gene
ENSDARG00000051836 | im:6904482
Description
im:6904482 [Source:ZFIN;Acc:ZDB-GENE-050506-81]
Coordinates
chr25:24070300-24075650:+
Coord C1 exon
chr25:24070300-24070365
Coord A exon
chr25:24074929-24075028
Coord C2 exon
chr25:24075498-24075650
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTTTCTGTTTTACAGACT
3' ss Score
9.71
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GAAAAGGAACAGATGTCCACTGGAATCTACACAACTAAATGGTTCCTTCAGTGCTTCATTGACAGG
Seq A exon
ACTCCCTTCACACTCACCTTACGTCTTTGGGATATCTACATATTAGAAGGAGAAAAGGTTCTGACAGCCATGGCTTATACTCTCCTCAAATTGCACAAAA
Seq C2 exon
AGCATCTTCTCAAATTGTCCCTGGAGGACCTGAGGGAATTTCTGCAGGAACGTACTGCTTCCTCTTTTAACATGAGTGATGATGTTGTCATTGAGCACCTACAATCATCTATGTCAGAACTTCGCAGGATGAAGCTTGACCTCCCCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051836-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAACAGATGTCCACTGGA
R:
GGGGAGGTCAAGCTTCATCCT
Band lengths:
210-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]